Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs34478148 chr3:150897403 A/G 0.000439 170 24.7 29.43 60.03 KM Plot
PCPG rs34535387 chr14:74314747 C/T 9.6E-6 178 25.47 28.3 10.3 KM Plot
PCPG rs34539488 chr17:50334160 A/G 0.00028 170 26.12 28.38 16.33 KM Plot
PCPG rs34539781 chr16:89955230 C/T 0.000157 176 25.77 21.5 36.37 KM Plot
PCPG rs34540362 chr2:242531133 G/A 4.02E-5 178 25.87 27.27 20.2 KM Plot
PCPG rs34547187 chr16:1770603 C/T 0 172 25.6 19.3 2.93 KM Plot
PCPG rs34562978 chr12:53502234 TA/T 1.19E-10 174 25.08 27.08 3.05 KM Plot
PCPG rs34574834 chr4:78951026 T/TG 0 173 2.93 25.43 25.28 KM Plot
PCPG rs34578331 chr22:29347215 G/T 0.000387 174 24.85 27.87 33.77 KM Plot
PCPG rs34587485 chr14:74308298 C/T 4.2E-6 175 25.47 27.2 10.43 KM Plot
PCPG rs34602793 chr17:50300935 G/A 6.47E-5 177 25.53 28.38 14.47 KM Plot
PCPG rs34604714 chr16:89948985 A/G 0.000157 176 25.77 21.5 36.37 KM Plot
PCPG rs34606253 chr2:61582738 A/C 6.43E-5 178 23.43 29.88 10.3 KM Plot
PCPG rs34626694 chr17:50260366 C/T 4.67E-5 171 25.77 28.47 14.43 KM Plot
PCPG rs34629155 chr12:26881800 G/A 8.77E-5 178 24.3 28.47 5.97 KM Plot